Workflow of RE:IN Cloud

Feature
Extraction
(Pyfeats) Feature Values
(for Edge)

Upload Ydata Feature Values

Image Fastdup
the file Profilling (for Re:In)

Tabular
Data/
Timeseries
POST Fastdup & Ydata-Profiling API
POST Pyfeats API
GET Pyfeats API (Download Result File)
 Cause Features
Cause Cause_Code V1 V2

Current Implementation: FOS_Mean C1 <=125 >125

FOS_Skewness C2 <=0 >0
• Included 3 effects (Data value features) such as Intensity, FOS_Kurtosis C3 <=0 >0
Complexity and Uniformity (Homogeneity). FOS_Entropy C4 <=0.5 >0.5
• The threshold (limits) are derived under the following condition FOS_CoefficientOfVariat
 Gray scale image with pixel range (0 to 255) ion C5 <1 >1
 Calculation based on 5x5 pixels.
GLCM_Entropy C6 <=0.5 >0.5
GLCM_ASM C7 <=0.5 >0.5
Drawbacks: GLCM_Contrast C8 <=128 >128
• The rules defined to refer the effects are not 100% accurate. GLCM_Correlation C9 <=8 >8

GLCM_InverseDifferenc
• The combinations were set according to the correlation and the eMoment C10 <=0.5 >0.5
calculation.
Future Implementation: NGTDM_Contrast C11 <=256 >256
NGTDM_Complexity C12 <=5 >5
• Need to check the pyradiomic related paper to find how to
segment / extract the features in medical image. NGTDM_Busyness C13 <=256 >256
NGTDM_Strength C14 <=1600 >1600
• Include the other features related to texture. NGTM_Coarseness C15 <=1600 >1600
• Partition the intensity with skewness.
CETA Cause-Effect Relationship
FOS_Mean (V1) and FOS_Skewness(V1) and FOS_Kurtosis (V1) and FOS_Entropy(V2) -> HIGH_Intensity
FOS_Mean (V2) and FOS_Skewness(V2) and FOS_Kurtosis (V2) and FOS_Entropy(V1) -> LOW_Intensity

NGTDM_Complexity(V2) and NGTDM_Coarseness(V1) and NGTDM_Busyness(V2) and NGTDM_Contrast(V1) ->

HIGH Complexity

NGTDM_Complexity(V1) and NGTDM_Coarseness(V1) and NGTDM_Busyness(V1) -> LOW_Complexity

GLCM_Entropy(V1) and GLCM_ASM(V2) and GLCM_InverseDifferenceMoment(V2) and GLCM_Correlation (V1)

and GLCM_Contrast(V2) -> HETEROGENEITY

GLCM_Entropy(V2) and GLCM_ASM(V1) and GLCM_InverseDifferenceMoment(V1) and GLCM_Correlation (V2)

and GLCM_Contrast(V1) -> HOMOGENEITY
Structural Similarity
• The structural similarity score can be found by reducing the high dimensional array to
2D array. [t-SNE (t-distributed stochastic neighbor embedding) algorithm]
• The t-SNE algorithm comprises two main stages. First, t-SNE constructs a probability
distribution over pairs of high-dimensional objects in such a way that similar objects are
assigned a higher probability while dissimilar points are assigned a lower probability.
Structural Similarity

• Tsne algorithm + kmeans

clustering ( cluster =10)
• Issue:
• According to kmeans, there are
two clusters.
• If you need similar image with
high probability, then we need to
increase the cluster points.