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Final Protocol Evaluation Committee 02-08-2012 Edited 05-04-2016
Final Protocol Evaluation Committee 02-08-2012 Edited 05-04-2016
Final Protocol Evaluation Committee 02-08-2012 Edited 05-04-2016
signal transduction
Bcr-Abl cascade
Substrate
Tyrosine
kinase cell
proliferation
ATP cell
P survival
Altered cell
adherence
Mode of action of Imatinib
Substrate
Bcr-Abl
protein
ATP
Imatinib
Response to imatinib
All patients do not respond similarly
80% respond favourably
Approximately 20% of CML patients do not
respond to treatment with imatinib
Primary resistance
Acquired resistance
Predicting response to imatinib
Studies have shown that patients with low
intracellular uptake and retention (IUR) of
imatinib do not respond favourably to
imatinib
Whereas patients with higher intracellular
levels of imatinib respond favourably
Therefore, intracellular concentration of
imatinib is a prognostic marker to predicting
response
Intracellular imatinib
X X
Responders to treatment
X
X
Oct-1 mRNA vs. IUR [im]
Patients displaying increased intracellular
accumulation of imatinib do not necessarily
show increased OCT-1 mRNA levels
In addition, effect of exposure to imatinib on
OCT-1 mRNA is unclear (Crossman et al.
2006)
This led White et al. (2008) to question
whether measuring OCT-1 mRNA is indeed
a true reflection of the amount of OCT-1
protein expressed on cells
Oct-1 mRNA vs. IUR [im]
It would be ideal to implement Oct-1 mRNA
method as a prognostic marker
Real time q-PCR for determining Oct-1 mRNA
will be easier, quicker and cost-effective
The IUR assay is technically complex and not
feasible as a routine diagnostic test
However, if levels of OCT-1 mRNA are
influenced by imatinib without subsequent
impact of the uptake of imatinib, this poses a
problem
It is important to determine whether OCT-1
mRNA corresponds to OCT-1 protein
Measuring OCT-1 protein
Already established a method to determine
OCT-1 mRNA but it is a challenge to
determine OCT-1 protein
Traditional methods such as western
blotting, flow cytometry etc
Semi-quantitative and tedious
Requires the use of monoclonal antibodies
Membrane protein challenges
Will not enable simultaneous mRNA AND
protein determination from the same
sample set
TaqMan protein assay
Shannon et al. (2009) described a real-time
Taqman protein assay
Detection and quantification of cellular protein
using real-time quantitative PCR
Use of polyclonal and/or monoclonal
antibodies
Overview of assay principle
Total Time
Hands on Time ~1.5 hrs
Time to Results ~3.5 hrs
Experiment
K562 cells treated with different
concentrations of imatinib and incubated for
24 hours, 48 hours and 72 hours
Determine amount of OCT-1 mRNA and
protein present using real time quantitative
PCR and the TaqMan assay respectively
Investigate the impact of imatinib on OCT-1
Genetics of Oct-1
Belongs to largest super family of
transporters
SLC (solute carrier) super family
Encoded by SLC22A1 gene
Located on chromosome 6
~36.9 kb with 11 exons
Alternative splicing of OCT-1 mRNA
Isoform a
1 2 3 4 5 6 7 8 9 10 11
554 amino acids
Functional transporter
1 2 3 5 6 7 8 10 Isoform b
4 11
Lacks exon 9
504 amino acids
Function unknown
Methodology
Real time quantitative PCR
Primers that amplify only functional isoform of Oct-1
are incorporated (spanning exon 7 and 9)
1 2 3 4 5 6 7 8 9 10 11
I II III IV
Step 1: Bind antibody to oligo
Antibody A Antibody B
linked to 3’ linked to 5’
oligo oligo
Step 2: Cell lysis
CELL LYSIS
OCT-1
DNA Ligase
OCT-1
Step 5: Real-time PCR
Connector oligo
OCT-1
Experimental outcomes
Oct-1 mRNA OCT-1 protein Comment
With increasing concentrations of
Unaffected Unaffected OCT-1 mRNA is valid
as a prognostic marker