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Sabitha Synopsis Final (1)
Sabitha Synopsis Final (1)
Chapter I – Introduction
2
Previous reports of the Experimental Plant
Author (Year) Study Area Plant parts used
8
Experimental plant
Systematic Position
Kingdom : Plantae
Class : Asterids
Order : Gentianales
Family : Apocynaceae
Genus : Oxystelma
Species : esculentum
Author name : R. Br.,
Plant collection and identification
Fresh healthy mature plant material was collected from natural
habitat at Trichy District. It was identified and authenticated (Ref. No.
R.S.001) in Rapinat Herbarium and center for Molecular Systematics, St,
9
10
Work Plan -I
11
Steps for In vitro plant tissue culture
Sterilization
Media preparation
Inoculation
Incubation
Hardening
12
Sterilization of Explants
Healthy Explant
17
Disc diffusion assay (Maruzella and Henry, 1958)
The rapid determination of the drug or a particular substance on a specific micro organisms.
Sterile liquid Nutrient Agar and Potato Dextrose Agar medium (pH 7.4 ± 2)
Chloramphenicol (30 g/disc) / Amphotericin (100 g/disc)/ were used as positive control
The inoculated plates were incubated at 37°C for 24 hrs. / 37°C for 36-72 hrs.
18
Each assay was conducted in triplicate.
Plate hole diffusion method (Leven et. al., 1979)
100 l bacterial culture + 20 ml of Nutrient Agar medium
100 l Fungal culture + 20 ml of Potato Dextrose Agar medium
Both experimental and control plates were incubated at 37°C for 24 hrs. / 37°C
for 36-72
hrs.
The inhibition zone formed around each well was measured
19
Anti-Oxidant Activity
Work done at Analytical Service Centre, Department of
Microbiology & Botany, A.V.V.M Poondi Pushpam College ,
Thanjavur
20
DPPH Scavenging Activity (Blois 1958)
Take diffefent concentrations of the extracts and make the volume to 100 µL with
methanol.
Add 5 mL of 0.1 mM methanolic solution of DPPH and incubate for 20 min at 27º
C.
Measure the absorbance of the solution at 517 nm.
A test tube with 100 µL of methanol and 5 mL of DPPH solution serves as negative
control.
The mixture of methanol, DPPH and standard (BHT, BHA, quercetin and α-
tocopherol will serve as positive control
The reduction in purple colour of the DPPH solution to pale yellow will give the
percentage of inhibition.
Calculate the percentage inhibition from the absorbance of sample and negative
control using the equation.
% of inhibition = [(Control OD – Sample21 OD) / Control OD] * 100
A test tube with deionized water alone will act as blank and reaction
mixture without standard or sample will be negative control
Make the solution to a volume of 1-3 mL.
26
α-Amylase Inhibitory Assay (Miller, 1959)
At 370 C the reaction is incubated for 5 min and terminated by the addition of 2
ml of DNS (3,5-dinitrosalicylic acid) reagent and incubated.
The reaction mixture is heated for 15 min at 100 degree Celsius and dilute with
10 ml of distilled water in an ice bath (Miller, 1959).
By measuring the spectrum at 540 nm the A-amylase inhibitory activity is
measured.
Calculation
Calculation
The following formulae we can calculate the A-amylase activity: % Inhibition = [(Abs
control - Abs samples)] / Abs Control] * 100
28
Work Plan - 3 Phytochemical Analysis & Green synthesis of silver nanoparticle
29
Synthesis of Silver Nanoparticles
1g of plant powder +100ml of Distilled water at 70̊ C
Once the mixture had a reddish brown color reduction Ag+ ions was
monitored
Silver – the biochemical reaction of AgNO3 react with plant broth leads
to the formation of AgNPs by following reaction
31
Ag+ NO3 - + Plant extract AgºNPs + by products
Qualitative Phytochemical Analysis
S.No. Name of the Test Experimental Procedure Observation
1. Test for 2-3ml of extract, add two drops of violet coloration occurs.
Carbohydrates: alpha naphthol solution in alcohol
Molisch’s test shake and add conc. H2SO4 from
sides of test tube.
2. Test for Steroids: 2ml of extract add 2ml chloroform Chloroform layer
Salkowski test: and 2ml conc. H2SO4. Shake well. appears red and acid
layer shows greenish
yellow florescence.
3. Test for Add 10ml of 50% HCl to the 2ml Brick red precipitate is
Glycosides: test solution. Heat on boiling water obtained.
a)General test: bath for 30min. Add 5ml of
Fehling’s solution and boiled for
5min.
b) Modified 5ml 5% FeCl3 and 5ml dil. HCl. Heat for Ammonia cal layer shows
Borntrager’s 5 min in boiling water bath. Cool and add pinkish red color.
test: benzene or any organic solvent. Shake
well. Separate organic layer. Add dilute
ammonia.
5 Test for Alkaloids: 2-3ml test solution add few drops Orange brown precipitate.
a) Dragendroff’s test: dragendroff’s reagent.
b) Wagner’s test: 2-3ml test solution with few drops Reddish brown precipitate.
wagner’s reagent.
c) Mayer’s test: 2-3ml test solution with few drops of White or pale precipitate.
mayer’s reagent.
33
6 Test for Tannins : 3-5 ml test solution with few drops Red precipitate is
a) Lead acetate test: of 1% lead acetate. obtained.
b) Ferric chloride test: 2-3ml test solution add 2ml of Blue precipitate is
FeCl3. obtained.
7 Test for Phenolic 1-2 ml test solution adds 2ml of Green color solution
Compounds: water and 10% aqueous ferric is obtained.
Ferric chloride test: chloride solution.
8 Test for Flavonoids: Test solution, add 5ml of alcohol.
Pink coloration
Shinoda test: Few drops of conc. HCl and
occurs.
magnesium turnings.
9 Test for Terpenoids: a) Test solutions add 2ml of Reddish brown
chloroform and 1ml of conc. coloration occurs.
H2SO4.
b) Test solution add 1ml of 2,4- Yellow orange
dinitrophenyl hydrazine in 2M HCl. coloration occurs.
10 Test for Saponins: Test solution add drop of sodium Honey comb like
Foam test: bicarbonate. Shake well. froth is obtained.
34
In-silico molecular docking
analysis
35
In-silico anti-diabetic activity by Molecular docking
studies
Oxystelma esculentum R. Br
Preparation of ligand (2D ChemDraw Professional 16.0 software)
mol format.
37
Effect of auxin (BAP) and cytokinin (KIN) (mg/L) on micropropagation on
nodal explant of Oxystelma esculentum R. Br.
1.81±0.4
2 1.0 20 14 70
2.06±0.59
3 1.5 20 16 80
4 2.0 20 18 90 2.27±0.57
1.4±0.5
5 2.5 20 11 55
PGR
KIN
1.73±0.66
1 0.5 20 11 55
2 1.0 20 17 85 2.01±0.81
1.73±0.75
3 1.5 20 15 75
1.72±0.78
4 2.0 20 11 55
1.64±0.60
5 2.5 20 38 13 65
Effect of auxin (BAP) and cytokinin (KIN) (mg/L) on micropropagation on nodal
explant of Oxystelma esculentum R. Br.
BAP KIN
100
90
90 85
80
80 75 75
70
70
% of Responded
65
60 55 55 55
50
40
30
20
10
0
1 2 3 4 5
Hormone Concentration
39
Effect of different concentrations of IAA with IBA on root induction of
Oxystelma esculentum R. Br
IAA IBA
Nodal Nodal Nodal
(mg/L) (mg/L)
40
Effect of different concentrations of IAA with IBA on root induction of
Oxystelma esculentum R. Br
90
85
80
75
70
65
60
% of root induction
55 55
50
40
30
20
10
0
1+0.5 1+1 1+1.5 1+2.0 1+2.5
41
Effect of cytokinins in shoot prolifereation on Oxystelma esculentum R.Br.
42
Effect of auxins in root prolifereation on Oxystelma esculentum R.Br.
43
Effect of hormone concentration on different type of Callus formation from leaf
explants of Oxystelma esculentum R. Br.
PGR
BAP (mg/l) No of
% of Callus
S. No Explant callus formation Type and color
induction
NAA 2,4-D Inoculated
(mg/l) (mg/l)
PGR
BAP (mg/l) No of
% of Callus
S. No Explant callus formation Type and color
induction
NAA 2,4-D Inoculated
(mg/l) (mg/l)
45
Effect of hormone concentration on different type of Callus formation from leaf
and stem explants of Oxystelma esculentum R. Br.
Leaf Stem
100 95 95
90 85
80
% of Callus induction
75
70 65 65
60 60
60 55 55
50
40
30
20
10
0
1+1 1+2 1+3 1+4 1+5
46
47
Indirect Organogenesis from Organogenic callus of Leaf Explants of
Oxystelma esculentum R.Br.
49
Effect of auxins on root induction from in vitro shoots obtained through calli of
Oxystelma esculentum R.Br.
No. of explants
Plant growth No. of Roots /
Responded / % of Roots induction
regulators Shoot
Inoculated
S.No.
IAA IBA
(mg/L) (mg/L)
50
Effect Effect of auxins on root induction from in vitro shoots obtained through calli
of of Oxystelma esculentum R.Br.
90
70
60
% of Response
50
40
1 2 3 4 5
Concentration
51
52
ANTIBACTERIAL ACTIVITY
53
Antibacterial screening of leaf extracts of Oxystelma esculentum on
pathogenic bacteria (Disc diffusion method)
Test bacteria Ethyl Acetate Ethanol Acetone Chloroform Petroleum ether Positive Control
Experimen Negative Experimen Negative Experimen Negative Experimenta Negative Experimen Negative Chloramphenicol
t control tal control tal control l control (30 g/disc) control (30 mcg/disc)
(30 g/disc) (30 g/disc) (30 (30 g/disc)
g/disc)
Gram-negative
25
20
15
Zones of inhibition in mm
10
0
s us us us i s ns ns
icu t ol en iae ca
lyt len u re
ce
re E.c esc oge on yto ora
o us sa s ar
c
ae
r m ox uc
iv
am cc cc
u illu m er n eu ella a
e o c S. ct i p
sh c co Ba a lap leb
s m
cu hylo ylo
ro
b siel K er
iu
coc ap ph te eb
ac
t
lo St St
a
En Kl eb
phy ev
St
a Br
Tested bacteria
55
56
Antibacterial screening of stem extracts of Oxystelma esculentum on
pathogenic bacteria (Disc diffusion method)
Inhibition zone diameter in mm (mean SD)
Test bacteria Ethyl Acetate Ethanol Acetone Chloroform Petroleum ether Positive Control
Experiment Negative Experiment Negative Experimental Negative Experimental Negative Experimen Negative Chloramphenico
(30 g/disc) control al control (30 g/disc) control (30 g/disc) control (30 g/disc) control l
(30 g/disc) (30 mcg/disc)
Gram-negative
16
14
Zones of inhibition in mm
12
10
0
s us us us li ns s ca ns
icu nt re re co ce en iae to ra
yt e u e E. es ro
g on y o
ol sl a c c um ox iv
m cu us lus ar ra
e
lla uc
ea c c c c i l
.m te ne sie pa
h co co Ba S ac lla
p m
us lo ly o b leb iu
cc hy
h ro sie K te
r
co ap ap te leb ac
ylo St St En K eb
h e v
ap Br
St Tested bacteria
58
59
Antibacterial screening of leaf extracts of Oxystelma esculentum on pathogenic bacteria
(Plate hole diffusion method)
Inhibition zone diameter in mm (mean SD)
Positive
Test bacteria Ethyl Acetate Ethanol Acetone Chloroform Petroleum ether
Control
Experime Negative Experime Negative Experime Negative Experiment Negative Experimen Negative Chloramp
nt control ntal control ntal control al control (30 control henicol
(30 (30 (30 (30 g/disc) g/disc) (30
g/disc) g/disc) g/disc) mcg/disc)
Gram-negative
25
20
15
Zones of inhibition in mm
10
0
s us us s li ns s ca ns
icu nt re eu co ce en iae to ra
yt e u er E. es ro
g on y o
ol sl a sc c um ox iv
m cu us illu ar ra
e
lla uc
ea c c c c .m te ne sie pa
h co co Ba S ac lla
p m
s lo ly o b leb iu
c cu hy
h ro sie K te
r
co ap ap te leb ac
ylo St St En K eb
ph e v
S ta Br
Tested bacteria
61
62
Antibacterial screening of stem extracts of Oxystelma esculentum on pathogenic bacteria
(pate hole diffusion method)
Positive
Test bacteria Ethyl Acetate Ethanol Acetone Chloroform Petroleum ether
Control
Experime Negative Experime Negative Experim Negative Experimen Negative Experime Negative Chlorampheni
nt control ntal control ental control tal control n control col
(30 (30 (30 (30 (30 (30 mcg/disc)
g/disc) g/disc) g/disc) g/disc) g/disc)
Gram-positive
16
14
12
10
Zones of inhibition in mm
0
s us us s li ns s ca ns
icu nt re eu co ce en iae to ra
yt e u ce
r E. es ro
g on y o
ol sl a s c um ox iv
m cu us illu ar ra
e
lla uc
ea c c c c .m te ne sie pa
h co co Ba S ac lla
p m
us lo ly o b leb iu
cc hy
h ro sie K te
r
co ap ap te leb ac
ylo St St En K eb
h e v
ap Br
St Tested bacteria
64
65
Antifungal activity of leaf extracts of Oxystelma esculentum on pathogenic Fungi
(Disc diffusion method)
Inhibition zone diameter in mm (mean SD)
Ethyl acetate Ethanol Acetone Chloroform Petroleum ether
Positive
Test Fungi
Control
Experiment N Experiment N Experiment N Experiment N Experiment N C
(30 g/disc) (30 g/disc) (30 g/disc) (30 g/disc) (30 g/disc) (30mcg/disc)
10 9.6
8.66
7.6 8
8 7.33 7.33 7 7.33
6.33
6
4
2
0 0 0 0 0 0 0 0
0
Aspergillus niger Cryptococcus neoformans Candida dubliniensis Candida albicans Candida tropicalis
Tested fungi
66
Antifungal activity of stem extracts of Oxystelma esculentum on pathogenic Fungi
(Disc diffusion method)
Inhibition zone diameter in mm (mean SD)
Ethyl acetate Ethanol Acetone Chloroform Petroleum ether Positive
Test Fungi Control
Experiment N Experiment N Experiment N Experiment N Experiment N C
(30 g/disc) (30 g/disc) (30 g/disc) (30 g/disc) (30 g/disc) (30mg/disc)
12
Zones of inhibition in mm
10
8
6
4
2
0
Tested fungi
67
68
Antifungal activity of leaf extracts of Oxystelma esculentum on
pathogenic Fungi (Plate hole diffusion method)
Inhibition zone diameter in mm (mean SD)
Ethyl acetate Ethanol Acetone Chloroform Petroleum ether Positive
Test Fungi Control
Experiment N Experiment N Experiment N Experiment N Experimen N C
(30 g/disc) (30 g/disc) (30 g/disc) (30 g/disc) t (30mcg/
(30 g/disc) disc)
14
Zones of inhibition in mm
12
10
8
6
4
2
0
Aspergillus niger Cryptococcus neoformans Candida dubliniensis Candida albicans Candida tropicalis
Tested fungi
69
Antifungal activity of Stem extracts of Oxystelma exculentum on pathogenic Fungi
(Plate hole diffusion method)
Inhibition zone diameter in mm (mean SD)
Ethyl acetate Ethanol Acetone Chloroform Petroleum ether Positive
Test Fungi Control
Experiment N Experiment N Experiment N Experimen N Experiment N C
(30 g/disc) (30 g/disc) (30 g/disc) t (30 g/disc) (30mg/disc)
(30
g/disc)
12
10
8
6
4
2
0
Aspergillus niger Cryptococcus neoformans Candida dubliniensis Candidaalbicans Candida tropicalis
Tested fungi
70
71
Anti-oxidant Activity
72
Scavenging Activity
IC50 Value (µg / ml)
Solvents used and Control DPPH SO
Ethanol 40.32288 27.062
Ethyl acetate 16.62041876 30.552
Acetone 103.816 19.838
13.23219
Ascorbic acid 11.347
DPPH SO
120
Ic 50 value of activity
100
80
60
40
20
0
Ethanol Ethyl acetate Acetone Ascorbic acid
73
(Phosphomolybdenum Assay, Ferric Reducing Antioxidant Power
(FRAP) Assay and Metal Chelating Activity)
Gram Equivalent (mg /gE)
PHM FRAP MC
1800
1600
1400
1200
1000
800
600
400
200
0
Eethanol Ethyl acetate Acetone Ascorbic acid
74
Anti-diabetic Activity
75
α-Amylase activity of Oxystelma esculentum (in percentage)
Concentration ug/ml Acetone Ethyl acetate Ethanol Acarbose
70
60
50
40
30
20
10
0
10 20 30 40 50
α-glucosidase activity of Oxystelma esculentum (in percentage)
Acetone Ethyl acetate Ethanol Acarbose
Concentration ug/ml
70
60
50
40
30
20
10
0
10 ug/ml 20 ug/ml 30 ug/ml 40 ug/ml 50 ug/ml
77
Anti-diabetic activity of Oxystelma esculentum
IC50 Value (µg / ml)
78
GREEN SYNTHESIS OF SILVER
NANOPARTICLES
79
Fig-20: UV-Spectrum of Synthesized Silver Nanoparticles
80
100
90
445.15cm-1
2079.06cm-1
80
70
661.50cm-1
60
50
%T
40
1638.45cm-1
30
20
3436.82cm-1
10
0
4000 3500 3000 2500 2000 1500 1000 500 400
cm-1
Name Description
Plant-II-OX-E-
82
SEM and DLS Analysis of Synthesized Silver Nanoparticles
83
EDAX image of Synthesized Silver Nanoparticles
cps/eV
3.5
3.0
2.5
2.0
Ag
Cl
1.5 C O Cl Ag
1.0
0.5
0.0
0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0
keV
84
Antibacterial activity by synthesized silvernanoparticle
85
Antibacterial activity by synthesized nanoparticle from leaf extracts of
Oxystelma esculentum
12
10
86
87
Qualitative Phytochemical Studies
88
Preliminary phytochemical screening of different leaf extracts of
Oxystelma esculentum R. Br.
1 Carbohydrates + + +
2 Reducing Sugar + + +
3 Proteins + + +
4 Amino acids + + +
5 Steroids + - +
6 Alkaloids + + +
7 Flavonoids + + +
89
(+) Present (-) Absent
Preliminary phytochemical screening of different leaf extracts of
Oxystelma esculentum R. Br.
8 Phenolic compounds + + +
9 Terpenoids + + +
10 Saponins + - +
11 Glycosides + + +
12 Non-reducing sugars + - -
13 Cardiac glycosides + + +
14 Tannins + + +
15 Saponin glycosides - - -
90
(+) Present (-) Absent
GC-MS chromatogram of O. esculentum
ethanol leaf extract
91
Phytoconstituents of O. esculentum R. Br.
screened by CG-MS and their biological activity
Sl. Rtn. % Mol. Mol.
Compound Name Biological Activity Reference
No Time Area Formula Wt.
1 P-Chloroamphetamine 6.107 0.38 C9H12ClN 169 - -
Farina et al.,
Antimalarial, antifungal, 2014;
2 1-Heptadecanol (Aliphatic alcohol) 15.921 0.08 C17H36O 256
Antioxidant, Antidiabetic Ramalakshmi,201
9
Yogeswari et al.,
3 Pentadecane (Aliphatic hydrocarbon) 16.096 0.13 C15H32 212 Antibacterial 2012; Rahbar et
al., 2012
Markus et al.,
Antimicrobial, anticancer, 2017; Osaro-
Cycloheptasiloxane, Tetradecamethyl-
4 17.526 0.9 C14H42O7Si7 518 Antioxidant Matthew et al.,
(Organo Silicone compound)
Antiseptic 2020
Osaro-Matthew et
5 Cyclooctasiloxane, Hexadecamethyl- 20.771 1.03 C16H48O8Si8 592 Antimicrobial
al., 2020
Markus et al.,
6 Cyclononasiloxane, Octadecamethyl- 32.324 2.02 C18H54O9Si9 666 Antioxidant
2017
Hepatoprotective,
38.9 C24H72O1 Bratty et. al.,
10 Tetracosamethyl-Cyclododecasiloxane 4.34 888 antispasmodic,
18 2Si12 2020
antirheumatic
Yan et.al.,
38.5 89.4 2015
11 Solanesol C45H74O 630 Antibacterial, antiviral
9 2 Li and chase,
2010
Antimicrobial,
1,2-Benzenedicarboxylic Acid, Disooctyl Ester (Plastilizer
34.8 Solvent, Plastilixer, Mary and
13 compound ) 0.35 C24H38O4 Pesticide, Repellent.
72 Giri, 2018
93
2D confirmations of selected phytoligands
Cl
NH2
a) p Chloramphetamine
HO
b) 1-Heptadecanol
c) Pentadecane
OH
O
OH
O
O OH
OH
HO
f) Solanesol
94
Virtual Screening Results using PyRx tool
Rank for
Ligand Binding Affinity best drug
p Chloramphetamine -6.3 3
1-Heptadecanol -5.9 4
Pentadecane -5.7 5
Solanesol -12.3 1
96
LigPlot interactions representing the binding residues
involved the docked
97
Works to be done
Compound Interpretation
98
Published Articles
R Sabitha, T Francis Xavier, S Balavivekananthan, A Freeda Rose 2021. An
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